Clover doesn't run tests directly; it integrates with existing test runners in the Ant, Maven, Eclipse and IntelliJ IDEA environments. Clover measures per-test coverage by specially instrumenting your JUnit or TestNG test classes. You can also define your own test detector to match other, homegrown test methods.
If you run manual tests, Clover can still measure code coverage for these tests. It will not be reported at the per-test level.
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