2012-10-16 17:05:38,432 WARN  [main ] org.twdata.pkgscanner.ExportPackageListBuilder org.twdata.pkgscanner.ExportPackageListBuilder-logDuplicateWarning - Package Scanner found duplicates for package 'com.atlassian.applinks.api.application.fecru' with different versions. Files: applinks-api-3.9.0.jar and applinks-api-3.5.5.jar
  'E:\Atlassian\Fisheye\lib\applinks-api-3.9.0.jar'
  'E:\Atlassian\Fisheye\lib\applinks-api-3.5.5.jar'
...
2012-10-16 17:05:38,476 WARN  [main ] org.twdata.pkgscanner.ExportPackageListBuilder org.twdata.pkgscanner.ExportPackageListBuilder-logDuplicateWarning - Package Scanner found duplicates for package 'com.atlassian.security.cookie' with different versions. Files: atlassian-cookie-tools-2.3.jar and atlassian-cookie-tools-2.0.jar
  'E:\Atlassian\Fisheye\lib\atlassian-cookie-tools-2.3.jar'
  'E:\Atlassian\Fisheye\lib\atlassian-cookie-tools-2.0.jar'
2012-10-16 17:05:38,477 WARN  [main ] org.twdata.pkgscanner.ExportPackageListBuilder org.twdata.pkgscanner.ExportPackageListBuilder-logDuplicateWarning - Package Scanner found duplicates for package 'com.atlassian.event.config' with different versions. Files: atlassian-event-2.2.0.jar and atlassian-event-2.1.1.jar
  'E:\Atlassian\Fisheye\lib\atlassian-event-2.2.0.jar'
  'E:\Atlassian\Fisheye\lib\atlassian-event-2.1.1.jar'
...
2012-10-16 17:05:41,802 ERROR [main ] com.atlassian.event.internal.EventPublisherImpl com.atlassian.event.internal.EventPublisherImpl-invokeListeners - There was an exception thrown trying to dispatch event 'com.atlassian.plugin.event.events.PluginFrameworkStartingEvent@11ab26e2' from the invoker 'com.atlassian.plugin.event.impl.MethodSelectorListenerHandler$1$1@4f2de841'.
java.lang.RuntimeException: aQute.lib.osgi.Clazz.<init>(Ljava/lang/String;LaQute/lib/osgi/Resource;)V
	at com.atlassian.plugin.event.impl.MethodSelectorListenerHandler$1$1.invoke(MethodSelectorListenerHandler.java:67)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher$2.run(AsynchronousAbleEventDispatcher.java:60)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher$1.execute(AsynchronousAbleEventDispatcher.java:28)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher.dispatch(AsynchronousAbleEventDispatcher.java:56)
	at com.atlassian.event.internal.EventPublisherImpl.invokeListeners(EventPublisherImpl.java:151)
	at com.atlassian.event.internal.EventPublisherImpl.publish(EventPublisherImpl.java:70)
	at com.atlassian.plugin.event.impl.DefaultPluginEventManager.broadcast(DefaultPluginEventManager.java:84)
	at com.atlassian.plugin.manager.DefaultPluginManager.init(DefaultPluginManager.java:137)

...
Caused by: java.lang.reflect.InvocationTargetException
...
Caused by: java.lang.NoSuchMethodError: aQute.lib.osgi.Clazz.<init>(Ljava/lang/String;LaQute/lib/osgi/Resource;)V