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Configuring outgoing basic http authentication will allow JIRA to trust a remote application (i.e. allow the remote application to access specified functions in JIRA).
To configure basic HTTP authentication for an outgoing application link:
Configuring incoming basic http authentication will allow the remote application that you are linking to, to trust JIRA (i.e. allow JIRA to access specified functions on the remote application it is linked to).
To configure basic HTTP authentication for an incoming application link:
Configuring OAuth Authentication for an Application Link
Configuring Trusted Applications Authentication for an Application Link