Documentation for JIRA 5.2. Documentation for other versions of JIRA is available too. 
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Deleting an application link stops two linked applications from sharing information. Once an application link is deleted, you will no longer be able to make requests from one application to the other and vice versa. This means that certain features may not work, for e.g. Inserting JIRA issues in Confluence, 2024-07-30_08-58-30_Confluence Page Gadget in JIRA, etc.
If you have set up application links to multiple servers of the same application type, e.g. you have linked your application to multiple JIRA servers, deleting the primary link will mean that another of the links will be made the primary link.
Deleting an application link will also delete all project links set up for that application link.
To delete an application link: