Documentation for JIRA 4.4. Documentation for other versions of JIRA is available too. 
The following outlines some basic techniques to secure a JIRA instance using Apache HTTP Server. These instructions are basic to-do lists and should not be considered comprehensive. For more advanced security topics see the "Further Information" section below.
- Using Apache to Limit Access to the JIRA Administration Interface
- Using Fail2Ban to limit login attempts (JIRA 4.1 has login-rate limiting, but Fail2Ban can be useful for older versions and more advanced security setups.)
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