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This page describes Atlassian's recommendation for installing JIRA and Confluence on the same server. Refer to Here Be Dragons for instructions on integrating all Atlassian applications.
We also do not support deploying multiple Atlassian applications to a single Tomcat container for a number of practical reasons. Firstly, you must shut down Tomcat to upgrade any application and secondly, if one application crashes, the other applications running in that Tomcat container will be inaccessible.
Finally, we recommend not deploying any other applications to the same Tomcat container that runs Confluence, especially if these other applications have large memory requirements or require additional libraries in Tomcat's lib subdirectory.
The information on this page does not apply to Confluence Cloud.
Atlassian recommends running JIRA and Confluence in separate stand-alone instances running behind an Apache Web Server. See the guides for:
common/lib or lib for Confluence running off Apache Tomcat version 6 or above), particularly if you later want to install a third webapp not from Atlassian.Apache Web Server is recommended and reliable. It is also a third-party product, and therefore not developed nor supported by Atlassian. See Atlassian Support Offerings for details.