Documentation for JIRA 6.3 EAP developer (EAP) releases only. Not using this? See below:
(JIRA 6.2.x documentation | JIRA OnDemand documentation | earlier versions of JIRA)

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The following outlines some basic techniques to secure a JIRA instance using Apache HTTP Server. These instructions are basic to-do lists and should not be considered comprehensive. For more advanced security topics see the "Further Information" section below.

Further information