Reindexing JIRA fails with nullPointerException

Platform Notice: Data Center - This article applies to Atlassian products on the Data Center platform.

Note that this knowledge base article was created for the Data Center version of the product. Data Center knowledge base articles for non-Data Center-specific features may also work for Server versions of the product, however they have not been tested. Support for Server* products ended on February 15th 2024. If you are running a Server product, you can visit the Atlassian Server end of support announcement to review your migration options.

*Except Fisheye and Crucible

Symptoms

Reindexing Jira fails with a nullPointerException. 

The following appears in the atlassian-jira.log:

2014-07-15 11:22:08,602 localhost-startStop-1 WARN      [atlassian.jira.index.AccumulatingResultBuilder] Indexing failed for Issue - '35432'
2014-07-15 11:22:08,602 localhost-startStop-1 WARN      [atlassian.jira.index.AccumulatingResultBuilder] com.atlassian.cache.CacheException: com.atlassian.cache.CacheException: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NullPointerException
java.lang.RuntimeException: com.atlassian.cache.CacheException: com.atlassian.cache.CacheException: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NullPointerException
	at com.atlassian.jira.index.DefaultIndex$Failure.<init>(DefaultIndex.java:123)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IndexIssuesOperation.perform(DefaultIssueIndexer.java:521)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:336)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:332)
	...
Caused by: com.atlassian.cache.CacheException: com.atlassian.cache.CacheException: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NullPointerException
	at com.atlassian.cache.memory.DelegatingCachedReference.get(DelegatingCachedReference.java:51)
	at com.atlassian.jira.issue.index.managers.FieldIndexerManagerImpl.getAllIssueIndexers(FieldIndexerManagerImpl.java:92)
	...
Caused by: com.atlassian.cache.CacheException: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NullPointerException
	at com.atlassian.cache.memory.DelegatingCachedReference.get(DelegatingCachedReference.java:51)
	at com.atlassian.jira.issue.search.managers.DefaultSearchHandlerManager.getHelper(DefaultSearchHandlerManager.java:254)
	at com.atlassian.jira.issue.search.managers.DefaultSearchHandlerManager.getAllSearchers(DefaultSearchHandlerManager.java:236)
	...
Caused by: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NullPointerException
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:149)
	at com.atlassian.util.concurrent.LazyReference.get(LazyReference.java:112)
	at com.atlassian.util.concurrent.ResettableLazyReference.get(ResettableLazyReference.java:92)
	at com.atlassian.jira.issue.fields.CustomFieldImpl.getCustomFieldSearcher(CustomFieldImpl.java:1915)
	at com.atlassian.jira.issue.fields.CustomFieldImpl.<init>(CustomFieldImpl.java:263)
	...
Caused by: java.lang.NullPointerException
	at com.atlassian.jira.util.JiraUtils.loadComponent(JiraUtils.java:97)
	at com.atlassian.jira.util.JiraUtils.loadComponent(JiraUtils.java:92)
	at com.atlassian.jira.issue.managers.DefaultCustomFieldManager.loadSearcher(DefaultCustomFieldManager.java:309)
	at com.atlassian.jira.issue.managers.DefaultCustomFieldManager.getCustomFieldSearcher(DefaultCustomFieldManager.java:288)
	at com.atlassian.jira.issue.fields.CustomFieldImpl$CustomFieldSearcherLazyRef.create(CustomFieldImpl.java:2225)
	at com.atlassian.util.concurrent.ResettableLazyReference$InternalReference.create(ResettableLazyReference.java:182)
	...
	at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42)
	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108)
	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:112)
	...
	at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:90)
	...
	at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.invokeMethodOnCurrentN(ScriptBytecodeAdapter.java:78)
	at com.onresolve.jira.groovy.ScriptManagerImpl.this$dist$invoke$1(ScriptManagerImpl.groovy)
	at com.onresolve.jira.groovy.ScriptManagerImpl$1.methodMissing(ScriptManagerImpl.groovy)  <+3> (NativeMethodAccessorImpl.java:57) (DelegatingMethodAccessorImpl.java:43)
	...
	at org.codehaus.groovy.runtime.callsite.PogoMetaClassSite.callCurrent(PogoMetaClassSite.java:66)
	at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:46)
	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:133)
	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:137)
	at com.onresolve.jira.groovy.ScriptManagerImpl$1.run(ScriptManagerImpl.groovy:394)
	... 1 more

Environment

Jira Data Center

Cause

From the stack trace, we can see that the problem is caused by the Script Runner plugin:

Caused by: java.lang.NullPointerException
    ...
	at org.codehaus.groovy.runtime.callsite.PogoMetaClassSite.callCurrent(PogoMetaClassSite.java:66)
	at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallCurrent(CallSiteArray.java:46)
	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:133)
	at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callCurrent(AbstractCallSite.java:137)
	at com.onresolve.jira.groovy.ScriptManagerImpl$1.run(ScriptManagerImpl.groovy:394)

Resolution

  • If Jira is running, stop Jira.

  • Remove the ScriptRunner/GroovyRunner JAR file from the Jira Home Directory.

  • The plugins folder in the Home Directory can be found in: $HOME_DIRECTORY/plugins/installed-plugins

  • After removing the plugin, restart Jira. 
  • Proceed to retry the indexing process.
  • Note: The plugin can be re-added to Jira after the upgrade completes successfully.
Last modified on Jan 27, 2025

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